rs6222792 SNP Detail

Summary

• ID
  rs6222792
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  116
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr4:130006504 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GCCTAATCCA ATTAGTTGCC
  AAGTCATGTC TAGTCTATCT CTGAAATAGC TTCAGAATCC ACCCGTTCTT CCCATCCCTG
  CGCCTGCTGT CTGGTTCATG CCCTGCCTGC CCAGCACCTG GGCTGCTGCC TTCCCCCAAC
  CCCCAGCTCA TCCTCCAAAA CCACATTGGC TAATTCTCCC AACAAGGCTC ACAGCACATC
  Y
  CTCCTCCTTA GGAAACCCTT CTGTGGTGCT CTGCTTTCTC CCACATAACT CTGCAGAGCA
  GTGCGTCTCT GTATATAAGC ACTATATATG GAGACTTACA GGTACCAGGC ACTGTGCTGG
  GCCTGCTGCA GGTGAGGATG GTGGTGGATG AGGGTGGTGG TGGTTATGAT GATGGTGATG
  GTGATGATGA AAGAAACTCT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	CZECHII/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss8628493	WI_WGS_4_127621487	WI	MOUSE	f	SNP							T		C
ss37717291	NES09173305	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T		C		T	T	C	C	T	T	C	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	CZECHII/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs6222792					SNP	T	T	T	T	T	T	T	C	C	T	T	C	C	T	T	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37717291	NES09173305	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:130006504 () rs orientation: forward

Symbol	Name	Function Class
Gm40258	predicted gene, 40258	714 bp upstream
Pef1	penta-EF hand domain containing 1	Intron
Rr600448	regulatory region 600448	54 bp distal