rs6222707 SNP Detail

Summary

• ID
  rs6222707
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  116
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr4:130006463 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TAAACACTTG GCTTTCTTCA
  CCCCACCCGC CCCCATCTCT TGCCTAATCC AATTAGTTGC CAAGTCATGT CTAGTCTATC
  TCTGAAATAG CTTCAGAATC CACCCGTTCT TCCCATCCCT GCGCCTGCTG TCTGGTTCAT
  GCCCTGCCTG CCCAGCACCT GGGCTGCTGC CTTCCCCCAA CCCCCAGCTC ATCCTCCAAA
  M
  CCACATTGGC TAATTCTCCC AACAAGGCTC ACAGCACATC TCTCCTCCTT AGGAAACCCT
  TCTGTGGTGC TCTGCTTTCT CCCACATAAC TCTGCAGAGC AGTGCGTCTC TGTATATAAG
  CACTATATAT GGAGACTTAC AGGTACCAGG CACTGTGCTG GGCCTGCTGC AGGTGAGGAT
  GGTGGTGGAT GAGGGTGGTG                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	CZECHII/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss8628408	WI_WGS_4_127621446	WI	MOUSE	f	SNP							A		C
ss37717292	NES09173304	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	A		C		A	A	C	C	A	A	C	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	CZECHII/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs6222707					SNP	A	A	A	A	A	A	A	C	C	A	A	C	C	A	A	C	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37717292	NES09173304	PERLEGEN	MM_PANEL	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:130006463 () rs orientation: forward

Symbol	Name	Function Class
Gm40258	predicted gene, 40258	673 bp upstream
Pef1	penta-EF hand domain containing 1	Intron
Rr600448	regulatory region 600448	13 bp distal