rs6222441 SNP Detail

Summary

• ID
  rs6222441
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  116
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr10:75773062 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CCCACAAGGG TGCTGCCACT
  CCCCACCAAT CTTGAGCCCA ATCCAAATGC TAGTTAGCAG TGTTTGAGTC CTAGGTCAGG
  AGAATCCGTG TGGCACGAGC CAGGAAAGTG TTGTAACTTG GGGTAGTCTA GCCCTGGGTC
  ACTCAACCTG CCTTAAACTA TACTTGAAAC ATCCCTAGCT AGGGCTAGGG AGTCGGGAGA
  R
  ACAGGAAGCC TCCAGCTTTG GCACTTACTT GTGGGTACCA CTTTTGAGCT GACAGTTGCC
  TCTTGTGCTC TTCCCCAGGC CCCTGCCCGG CCTGCCTCTC ACCCCCTGCA GATGGGGCCC
  TGCTCCTATG AGATCAAGCA GTTCCTGGAC TGCTCCACCA CTCAGAGCGA CCTAACCCTG
  TGTGAGGGCT TCAGCGAGGC                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	C57BL/6J	CZECHII/EiJ
ss8628142	WI_WGS_10_76372351	WI	MOUSE	f	SNP	G	A
SNP Consensus Information
SNP					Consensus Type	C57BL/6J	CZECHII/EiJ
rs6222441					SNP	G	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr10:75773062 () rs orientation: forward

Symbol	Name	Function Class
Chchd10	coiled-coil-helix-coiled-coil-helix domain containing 10	Intron
Cpgi1737	CpG island 1737	788 bp distal
Gm867	predicted gene 867	495 bp downstream
Rr384937	regulatory region 384937	42 bp upstream
Rr401998	regulatory region 401998	1183 bp downstream
Rr434184	regulatory region 434184	1645 bp distal
Rr434185	regulatory region 434185	within coordinates
Tssr94149	transcription start site region 94149	1356 bp downstream
Tssr94150	transcription start site region 94150	1320 bp downstream
Tssr94151	transcription start site region 94151	969 bp downstream
Tssr94152	transcription start site region 94152	936 bp downstream
Tssr94153	transcription start site region 94153	906 bp downstream
Tssr94154	transcription start site region 94154	895 bp downstream
Tssr94155	transcription start site region 94155	811 bp downstream
Tssr94156	transcription start site region 94156	54 bp downstream
Tssr94157	transcription start site region 94157	33 bp downstream
Tssr94158	transcription start site region 94158	69 bp upstream
Tssr98154	transcription start site region 98154	1160 bp downstream