rs6222430 SNP Detail

Summary

• ID
  rs6222430
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  116
• Last Updated in dbSNP Build
  116
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:12627645 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                                         ATGTGATAAT
  CAAAGGAGGC CAGATGACAA AGCATCTGAT TGCTGGGCTA AAGGAACTGA CTAAGTGACC
  AGGAAGACTT TAAGCAATGA TGACAGAAAA GAAAGCAGAG TTTAAAAACA AAAATACAGG
  AAGGGGTCCC GACTTAATTT GTGTTCACCA TCCTGGAATT TGGGGACTAA GGTGAAGAGG
  AGACAACTCT AGCCCTTGCA AGCTTGACCA CATTTGATCT GAGTTTGGAG AAGCTGTCAG
  R
  GGTGGACACA AACTGAAAGC TCTCTGTAAG GAGGTTGATT ATTATGCCAG GCTGCCCCTG
  GTCTGAACAA AAGTCCTAGA CGCATAAGCT ACTTTTGCCT TAGAAATAAT GTGTGACTGT
  CTACCAGTTT TGATGTCCTT TCTCCTAAAA AAGTGTTACC TCAAAATTTA TTTTCTTGGC
  CTATTTTTTT TATCTTTCTT ATTAAGTTTT CATACGATAT ATTTTGATCA TGTTTTCCCT
  GCTGCCAGTT                                                       
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	C57BL/6J	CZECHII/EiJ
ss8628131	WI_WGS_4_12116897	WI	MOUSE	f	SNP	G	A
SNP Consensus Information
SNP					Consensus Type	C57BL/6J	CZECHII/EiJ
rs6222430					SNP	G	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:12627645 () rs orientation: forward

Symbol	Name	Function Class
Gm37985	predicted gene, 37985	within coordinates
Rr589092	regulatory region 589092	within coordinates
Rr589093	regulatory region 589093	848 bp proximal