rs6222421 SNP Detail

Summary

• ID
  rs6222421
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  116
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:173636372 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GGACCTGAGC CCACCAATGG
  CCTGAAGTTT GTAAAGCAGC CTCCAGCCCT GTCCAGTCAC CTCCTCATGT TGGTCTTCCT
  CTCCCTCCTT CCCTTCTGCT CTAGACAGGA AGTTGCAAAG ATTCTCTAGG CTGAGGTCCT
  GATGCCCCCC CAACTCCCAG ACTCCCCGTA AACACACACT TGCTGAAAGG ACGAGAAACC
  Y
  ACTGACGTAT CTAGGTGGGT TAGAAGAAGC CCTGCCCAGG TAGCCTGCCT GGCCTAGTGC
  TGGGGGTTTT GCTGAACCCC TCCTGCCACT GTTTGGCAGA CAGTGACACT CAGAGGCTGG
  GTGGCCTGCC ACAGTTGTCC ACAGTTGCAC ACTGCCCTGC AGGACCTGTC CCAGAGCTGC
  ATGGCAGTTT GCACGTCCTC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	C57BL/6J	CZECHII/EiJ
ss8628122	WI_WGS_2_175034086	WI	MOUSE	f	SNP	T	C
SNP Consensus Information
SNP					Consensus Type	C57BL/6J	CZECHII/EiJ
rs6222421					SNP	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:173636372 () rs orientation: forward

Symbol	Name	Function Class
Gm14371	predicted gene 14371	within coordinates
Gm75809	predicted gene, 75809	within coordinates
Rr572034	regulatory region 572034	1816 bp distal
Rr572035	regulatory region 572035	479 bp proximal