rs6222297 SNP Detail

Summary

• ID
  rs6222297
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  116
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:80924828 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GAAATGGTGT CCCAACCAGT
  GAAATGTGGC TATTTTTATT TTAGAGAAAA ATTCCACACA TCAGTTCTGT GAGGAAAAGA
  GCTGGTGTCT GAATGAGGAA ATTTAGACTT TGCAGGAGTT AGGGAGCTAA GAGAAATATT
  ACCACCAGGT CGTGTGGACA GTGGCGTCTG CTGGATTCAC ATGAGCAAGG ATGTCCCCAA
  R
  TACATCTATT TCTTAAAAAT TGCTGACAGC ATGGAAGAGA AGCAGAGTAC AGATGTTTGG
  TGGTGCTAAA GAAGGACTGT AGCAATAGCA GAATGCAATT GTGTTGGAGA CTGCCCTAAA
  AGTTACTTAC TTCAAAGTAC AGGCTCAGCC AGGTTCTTGA GTAATTTAAG GAAGTTACTC
  AATTTCAGCC TTGATTTCTG                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	C57BL/6J	CZECHII/EiJ
ss8627997	WI_WGS_4_78299924	WI	MOUSE	f	SNP	G	A
SNP Consensus Information
SNP					Consensus Type	C57BL/6J	CZECHII/EiJ
rs6222297					SNP	G	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:80924828 () rs orientation: forward

Symbol	Name	Function Class
Rr594193	regulatory region 594193	329 bp distal