rs6221849 SNP Detail

Summary

• ID
  rs6221849
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  116
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:80924803 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTCTTGTCTA TCATAACAGT
  ATTGAGAAAT GGTGTCCCAA CCAGTGAAAT GTGGCTATTT TTATTTTAGA GAAAAATTCC
  ACACATCAGT TCTGTGAGGA AAAGAGCTGG TGTCTGAATG AGGAAATTTA GACTTTGCAG
  GAGTTAGGGA GCTAAGAGAA ATATTACCAC CAGGTCGTGT GGACAGTGGC GTCTGCTGGA
  K
  TCACATGAGC AAGGATGTCC CCAAGTACAT CTATTTCTTA AAAATTGCTG ACAGCATGGA
  AGAGAAGCAG AGTACAGATG TTTGGTGGTG CTAAAGAAGG ACTGTAGCAA TAGCAGAATG
  CAATTGTGTT GGAGACTGCC CTAAAAGTTA CTTACTTCAA AGTACAGGCT CAGCCAGGTT
  CTTGAGTAAT TTAAGGAAGT                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	C57BL/6J	CZECHII/EiJ
ss8627549	WI_WGS_4_78299899	WI	MOUSE	f	SNP	T	G
SNP Consensus Information
SNP					Consensus Type	C57BL/6J	CZECHII/EiJ
rs6221849					SNP	T	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:80924803 () rs orientation: forward

Symbol	Name	Function Class
Rr594193	regulatory region 594193	304 bp distal