rs6221827 SNP Detail

Summary

• ID
  rs6221827
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  116
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:80924792 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CAACGGTTTG ACTCTTGTCT
  ATCATAACAG TATTGAGAAA TGGTGTCCCA ACCAGTGAAA TGTGGCTATT TTTATTTTAG
  AGAAAAATTC CACACATCAG TTCTGTGAGG AAAAGAGCTG GTGTCTGAAT GAGGAAATTT
  AGACTTTGCA GGAGTTAGGG AGCTAAGAGA AATATTACCA CCAGGTCGTG TGGACAGTGG
  Y
  GTCTGCTGGA TTCACATGAG CAAGGATGTC CCCAAGTACA TCTATTTCTT AAAAATTGCT
  GACAGCATGG AAGAGAAGCA GAGTACAGAT GTTTGGTGGT GCTAAAGAAG GACTGTAGCA
  ATAGCAGAAT GCAATTGTGT TGGAGACTGC CCTAAAAGTT ACTTACTTCA AAGTACAGGC
  TCAGCCAGGT TCTTGAGTAA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	C57BL/6J	CZECHII/EiJ
ss8627527	WI_WGS_4_78299888	WI	MOUSE	f	SNP	C	T
SNP Consensus Information
SNP					Consensus Type	C57BL/6J	CZECHII/EiJ
rs6221827					SNP	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:80924792 () rs orientation: forward

Symbol	Name	Function Class
Rr594193	regulatory region 594193	293 bp distal