rs6221802 SNP Detail

Summary

• ID
  rs6221802
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  116
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:80924777 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AAAAAAATTT TTTTTCAACG
  GTTTGACTCT TGTCTATCAT AACAGTATTG AGAAATGGTG TCCCAACCAG TGAAATGTGG
  CTATTTTTAT TTTAGAGAAA AATTCCACAC ATCAGTTCTG TGAGGAAAAG AGCTGGTGTC
  TGAATGAGGA AATTTAGACT TTGCAGGAGT TAGGGAGCTA AGAGAAATAT TACCACCAGG
  W
  CGTGTGGACA GTGGCGTCTG CTGGATTCAC ATGAGCAAGG ATGTCCCCAA GTACATCTAT
  TTCTTAAAAA TTGCTGACAG CATGGAAGAG AAGCAGAGTA CAGATGTTTG GTGGTGCTAA
  AGAAGGACTG TAGCAATAGC AGAATGCAAT TGTGTTGGAG ACTGCCCTAA AAGTTACTTA
  CTTCAAAGTA CAGGCTCAGC                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	C57BL/6J	CZECHII/EiJ
ss8627502	WI_WGS_4_78299873	WI	MOUSE	f	SNP	T	A
SNP Consensus Information
SNP					Consensus Type	C57BL/6J	CZECHII/EiJ
rs6221802					SNP	T	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:80924777 () rs orientation: forward

Symbol	Name	Function Class
Rr594193	regulatory region 594193	278 bp distal