rs6221663 SNP Detail

Summary

• ID
  rs6221663
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  116
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:30196725 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTGAAGCCAT TATCCAGGTG
  TTGTCAGTAG GCCAGGCTCT GAAAAGTCTC CTGACTTGCA TGTTTAATTA AGGAGCTATC
  TTGAGAGCAA GAAAGTTTGA TAATGCTCCA AGGTCATTTT CTGTGCAGGA ACATTGTTAT
  GCCGGTAAAT ATCTTAGTTT TCTAAAGATA CATAAATGTC AGTTTAAAAT ACACTATTTG
  W
  TCTCACCCTC TTCCTCTTTT TCTGTTGCAC TGCAACTGTT TGATAATGAG GGTACCCACA
  TACGCACACA TACAGGGGCA ATCCCACCAT ACTATTGGTC TACTTGCCCA GAAAGAAGCT
  CAAAGAAGCT ATAGAATGAG CTATGGAGGA GATCAACTTG TAGTGTTGGG CATAACACCA
  GTATTTAAAA GTATAGCTGA                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CZECHII/EiJ	DBA/2J	FVB/NJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ
ss8627363	WI_WGS_3_29955521	WI	MOUSE	f	SNP							T	A
ss49570939	NES12879294	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T			T	T	T	T	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CZECHII/EiJ	DBA/2J	FVB/NJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ
rs6221663					SNP	T	T	T	T	T	T	T	A	T	T	T	T	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss49570939	NES12879294	PERLEGEN	MM_PANEL	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:30196725 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Mecom	MDS1 and EVI1 complex locus			Intron
				Noncoding-Transcript-Variant
Rr574725	regulatory region 574725			1692 bp distal
Rr574726	regulatory region 574726			1388 bp proximal