rs6221347 SNP Detail

Summary

• ID
  rs6221347
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  116
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:80924700 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTGGGTCTAA TTTCCAGATT
  GAATTACTGG GTGTTTTTGT GTCTTTGCAT TGCAAATAAA TCAATGTTAT ACGTAAGAAA
  AAAATTTTTT TTCAACGGTT TGACTCTTGT CTATCATAAC AGTATTGAGA AATGGTGTCC
  CAACCAGTGA AATGTGGCTA TTTTTATTTT AGAGAAAAAT TCCACACATC AGTTCTGTGA
  R
  GAAAAGAGCT GGTGTCTGAA TGAGGAAATT TAGACTTTGC AGGAGTTAGG GAGCTAAGAG
  AAATATTACC ACCAGGTCGT GTGGACAGTG GCGTCTGCTG GATTCACATG AGCAAGGATG
  TCCCCAAGTA CATCTATTTC TTAAAAATTG CTGACAGCAT GGAAGAGAAG CAGAGTACAG
  ATGTTTGGTG GTGCTAAAGA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	CZECHII/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss8627045	WI_WGS_4_78299796	WI	MOUSE	f	SNP							G		A
ss38233218	NES09615474	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G		A		G	G	G	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	CZECHII/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs6221347					SNP	G	G	G	G	G	G	G	A	A	G	G	G	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss38233218	NES09615474	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:80924700 () rs orientation: forward

Symbol	Name	Function Class
Rr594193	regulatory region 594193	201 bp distal