rs6220840 SNP Detail

Summary

• ID
  rs6220840
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  116
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:100727453 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TCATCCCCCT TCACGCAGTG
  GCAGAAGAGT GCTCGGAGGC CACATAAGAC ATCCCAAATG CTTAAGTACT CTACCTGTAC
  CATGTCTGCT AATGTTACAA AGACCAAGTG TCAGGGCAAG ATTGCTCAAA GGCACCAAGA
  AAGGGAAGCA TGACCTGAAG GTCATTGGCA GAAGACGCCC CAACAGCTTT CCTGAGAAAC
  Y
  CCAGGCAAAT GGCTTGAGAC TATGAGAGAT ACAATTTATA GATAAGCTAG AAGTTTGGGT
  CTTAGAATAC AGGTTCAAGA ACGAAATGAC TCAGTGCTCA AGTGCACTGA CTTCTCTTCC
  AGAGGTCCCT AGTTCAATTC CCAGCACCCA CAGGGTGGCT CACAAACCAT CTGTAATGGG
  ATCTGATGCC CTCTTCTGGT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	C57BL/6J	CZECHII/EiJ
ss8626534	WI_WGS_3_100922121	WI	MOUSE	f	SNP	T	C
SNP Consensus Information
SNP					Consensus Type	C57BL/6J	CZECHII/EiJ
rs6220840					SNP	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:100727453 () rs orientation: forward

Symbol	Name	Function Class
Gm32720	predicted gene, 32720	255 bp downstream
Rr581909	regulatory region 581909	772 bp distal
Rr581910	regulatory region 581910	within coordinates
Rr581911	regulatory region 581911	349 bp distal
Rr581912	regulatory region 581912	728 bp proximal
Rr581913	regulatory region 581913	1383 bp proximal
Rr581914	regulatory region 581914	1519 bp proximal