rs6220790 SNP Detail

Summary

• ID
  rs6220790
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  116
• Last Updated in dbSNP Build
  116
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:80924566 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                                         AACAGAAGGC
  ATTTCACATC AGGAAAACTT GGGAGGAAAA GCTGCTTGCT CCTGGTAGTG TTAGGTTTCA
  TGGGGGGGCA TAAGTTCTGC TAATTAAGAT GAAAGAAAAA CCTGGATGCC GGTGACACTC
  TTTCCTGCTA GGCTGAAGAA CAAATCTGTC ATGATAACTC TAGCTTTCCT TTCACTGGGT
  CTAATTTCCA GATTGAATTA CTGGGTGTTT TTGTGTCTTT GCATTGCAAA TAAATCAATG
  K
  TATACGTAAG AAAAAAATTT TTTTTCAACG GTTTGACTCT TGTCTATCAT AACAGTATTG
  AGAAATGGTG TCCCAACCAG TGAAATGTGG CTATTTTTAT TTTAGAGAAA AATTCCACAC
  ATCAGTTCTG TGANGAAAAG AGCTGGTGTC TGAATGAGGA AATTTAGACT TTGCAGGAGT
  TAGGGAGCTA AGAGAAATAT TACCACCAGG NCGTGTGGAC AGTGGNGTCT GCTGGANTCA
  CATGAGCAAG                                                       
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	C57BL/6J	CZECHII/EiJ
ss8626483	WI_WGS_4_78299662	WI	MOUSE	f	SNP	T	G
SNP Consensus Information
SNP					Consensus Type	C57BL/6J	CZECHII/EiJ
rs6220790					SNP	T	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:80924566 () rs orientation: forward

Symbol	Name	Function Class
Rr594193	regulatory region 594193	67 bp distal