rs6220384 SNP Detail

Summary

• ID
  rs6220384
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  116
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:100727416 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GCTGGTATTT CAGGGGTCCC
  TGCTGGAATG GCTCATCTCA TCCCCCTTCA CGCAGTGGCA GAAGAGTGCT CGGAGGCCAC
  ATAAGACATC CCAAATGCTT AAGTACTCTA CCTGTACCAT GTCTGCTAAT GTTACAAAGA
  CCAAGTGTCA GGGCAAGATT GCTCAAAGGC ACCAAGAAAG GGAAGCATGA CCTGAAGGTC
  M
  TTGGCAGAAG ACGCCCCAAC AGCTTTCCTG AGAAACTCCA GGCAAATGGC TTGAGACTAT
  GAGAGATACA ATTTATAGAT AAGCTAGAAG TTTGGGTCTT AGAATACAGG TTCAAGAACG
  AAATGACTCA GTGCTCAAGT GCACTGACTT CTCTTCCAGA GGTCCCTAGT TCAATTCCCA
  GCACCCACAG GGTGGCTCAC                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	C57BL/6J	CZECHII/EiJ
ss8626075	WI_WGS_3_100922084	WI	MOUSE	f	SNP	A	C
SNP Consensus Information
SNP					Consensus Type	C57BL/6J	CZECHII/EiJ
rs6220384					SNP	A	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:100727416 () rs orientation: forward

Symbol	Name	Function Class
Gm32720	predicted gene, 32720	292 bp downstream
Rr581909	regulatory region 581909	735 bp distal
Rr581910	regulatory region 581910	within coordinates
Rr581911	regulatory region 581911	312 bp distal
Rr581912	regulatory region 581912	765 bp proximal
Rr581913	regulatory region 581913	1420 bp proximal
Rr581914	regulatory region 581914	1556 bp proximal