rs6220200 SNP Detail

Summary

• ID
  rs6220200
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  116
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:51340883 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTCCTTCCGT CATACTGGTC
  CAACTTAGGC TGTCAGATGT GACAGTGGGT ATAAACTACC TGCCCAACCA TCTCACTGAC
  TGAAGATTTA TTTTCAAATT TTAGTAAAGG TAGATCTGAA TCTTCTCCCA GGGAATGGGC
  AGTCTGGGTC TATGCCAGAG CCACTAGCGT TAACGAATTT TTTTTTTTCT CTAGGTGTTT
  R
  GTGCCTGAGC ACCTGTAGGC TTGTGCTGCT CTGTAGCTGT TCTGGGTTAA GTCAAGTCTG
  GTGTGGGCCT TCCCCAGTTT AATCTTTTTT TGTTTTTGTT TTTCTTTTTG TTTGTTTTTT
  CGAGACAGGG TTTCTCTGTG TAGCCCTGGC TGTCCTGGAA CTTACTCTGT AGACCAGGCT
  GGCCTCAAAC TCAGAAATCC                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	BTBR T<+> Itpr3/J	C57BL/6J	CZECHII/EiJ	FVB/NJ	MOLF/EiJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss8625891	WI_WGS_3_51870922	WI	MOUSE	f	SNP		A	G
ss49598129	NES12917458	PERLEGEN	MM_PANEL2	f	SNP	A			A	G	G	G	A
SNP Consensus Information
SNP					Consensus Type	BTBR T<+> Itpr3/J	C57BL/6J	CZECHII/EiJ	FVB/NJ	MOLF/EiJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs6220200					SNP	A	A	G	A	G	G	G	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss49598129	NES12917458	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:51340883 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Naa15	N(alpha)-acetyltransferase 15, NatA auxiliary subunit			Intron
				Noncoding-Transcript-Variant
Rr576318	regulatory region 576318			622 bp proximal
Rr576319	regulatory region 576319			1049 bp proximal
Rr576320	regulatory region 576320			1522 bp proximal