rs6219738 SNP Detail

Summary

• ID
  rs6219738
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  116
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:51340842 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CCATGTGGGT TTACATAAAA
  GAACTTTTGG GAGTAAATTC TTTCCTTCCG TCATACTGGT CCAACTTAGG CTGTCAGATG
  TGACAGTGGG TATAAACTAC CTGCCCAACC ATCTCACTGA CTGAAGATTT ATTTTCAAAT
  TTTAGTAAAG GTAGATCTGA ATCTTCTCCC AGGGAATGGG CAGTCTGGGT CTATGCCAGA
  R
  CCACTAGCGT TAACGAATTT TTTTTTTTCT CTAGGTGTTT AGTGCCTGAG CACCTGTAGG
  CTTGTGCTGC TCTGTAGCTG TTCTGGGTTA AGTCAAGTCT GGTGTGGGCC TTCCCCAGTT
  TAATCTTTTT TTGTTTTTGT TTTTCTTTTT GTTTGTTTTT TCGAGACAGG GTTTCTCTGT
  GTAGCCCTGG CTGTCCTGGA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	C57BL/6J	CZECHII/EiJ	MOLF/EiJ	NZW/LacJ	WSB/EiJ
ss8625425	WI_WGS_3_51870881	WI	MOUSE	f	SNP	G	A
ss49598130	NES12917457	PERLEGEN	MM_PANEL2	f	SNP			G	A	G
SNP Consensus Information
SNP					Consensus Type	C57BL/6J	CZECHII/EiJ	MOLF/EiJ	NZW/LacJ	WSB/EiJ
rs6219738					SNP	G	A	G	A	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss49598130	NES12917457	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:51340842 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Naa15	N(alpha)-acetyltransferase 15, NatA auxiliary subunit			Intron
				Noncoding-Transcript-Variant
Rr576318	regulatory region 576318			663 bp proximal
Rr576319	regulatory region 576319			1090 bp proximal
Rr576320	regulatory region 576320			1563 bp proximal