rs6219715 SNP Detail

Summary

• ID
  rs6219715
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  116
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:51340830 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        TTCTC CCAGGGAATG GGCAGTCTGG
  R
  TCTATGCCAG AGCCACTAGC GTTAA                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J	CZECHII/EiJ	DBA/2J	LG/J	SM/J
ss8625402	WI_WGS_3_51870869	WI	MOUSE	f	SNP			G	A
ss135173288	ENSMUSSNP3847984	ENSEMBL	ENSEMBL_Sanger	f	SNP	A	G			G
ss320762682	CHEV_3_51237331	CHEVERUD	SCREENING_POP	f	SNP						G	A
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J	CZECHII/EiJ	DBA/2J	LG/J	SM/J
rs6219715					SNP	A	G	G	A	G	G	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:51340830 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Naa15	N(alpha)-acetyltransferase 15, NatA auxiliary subunit			Intron
				Noncoding-Transcript-Variant
Rr576318	regulatory region 576318			675 bp proximal
Rr576319	regulatory region 576319			1102 bp proximal
Rr576320	regulatory region 576320			1575 bp proximal