rs6219170 SNP Detail

Summary

• ID
  rs6219170
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  116
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr6:72357273 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CAAGGACCCA CCAAGGTAAG
  TATTGCTGCC CCTACTTCAC TGCGCGGAAA AGGAGGCTCG TGGAGGTTAA GTAACTTGCC
  CGGTATTGCC GGGAGCTGAT AACTGCTCCA GGAGCGTGGG AAGCTGTAGC ACCGCTCACT
  CTGCCCCGAC GGGGCGCACT CCGAAGTCTC CCTCCCCGGT TGCCTGCAAA GTTGGGGACT
  R
  GTCCGTGCGA CCAGCGTGAC CTATGCCCCT GGGGTTCAGA ATCCTGCTTT TTGCCCCTGC
  ACAATCGCCC TCTGCCCCTG CCCGTCTCAC CATTGCCTCC GCAGCCGCCG CCGCTGCCTG
  CTCGCCGGCT CCGATTCCTC TGCCCCGAGC GGCCTCAGTG CCCGCGGCCC GGGAGGAAGC
  CGTGGGGCGG GGCGGGCCCG                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	C57BL/6J	CZECHII/EiJ
ss8624852	WI_WGS_6_73256837	WI	MOUSE	f	SNP	A	G
SNP Consensus Information
SNP					Consensus Type	C57BL/6J	CZECHII/EiJ
rs6219170					SNP	A	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:72357273 () rs orientation: forward

Symbol	Name	Function Class
Gm52494	predicted gene, 52494	within coordinates
Rr632154	regulatory region 632154	1829 bp distal
Rr632155	regulatory region 632155	1621 bp distal
Rr632156	regulatory region 632156	684 bp distal
Rr632157	regulatory region 632157	within coordinates
Rr632158	regulatory region 632158	122 bp proximal
Rr632159	regulatory region 632159	277 bp proximal
Tssr61448	transcription start site region 61448	126 bp downstream
Tssr61449	transcription start site region 61449	1390 bp downstream
Tssr61450	transcription start site region 61450	1464 bp downstream
Vamp5	vesicle-associated membrane protein 5	Intron