rs6219112 SNP Detail

Summary

• ID
  rs6219112
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  116
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr6:72357236 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTGGCAGCAG CGACCATAAA
  CATCTTCTTT AACCTCTCAA GGACCCACCA AGGTAAGTAT TGCTGCCCCT ACTTCACTGC
  GCGGAAAAGG AGGCTCGTGG AGGTTAAGTA ACTTGCCCGG TATTGCCGGG AGCTGATAAC
  TGCTCCAGGA GCGTGGGAAG CTGTAGCACC GCTCACTCTG CCCCGACGGG GCGCACTCCG
  R
  AGTCTCCCTC CCCGGTTGCC TGCAAAGTTG GGGACTAGTC CGTGCGACCA GCGTGACCTA
  TGCCCCTGGG GTTCAGAATC CTGCTTTTTG CCCCTGCACA ATCGCCCTCT GCCCCTGCCC
  GTCTCACCAT TGCCTCCGCA GCCGCCGCCG CTGCCTGCTC GCCGGCTCCG ATTCCTCTGC
  CCCGAGCGGC CTCAGTGCCC                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CZECHII/EiJ	DBA/2J	FVB/NJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss8624794	WI_WGS_6_73256800	WI	MOUSE	f	SNP						A	G
ss47979216	NES11920535	PERLEGEN	MM_PANEL2	f	SNP	A	G	A	A	A			A	A	G	G	A	G	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CZECHII/EiJ	DBA/2J	FVB/NJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs6219112					SNP	A	G	A	A	A	A	G	A	A	G	G	A	G	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47979216	NES11920535	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:72357236 () rs orientation: forward

Symbol	Name	Function Class
Gm52494	predicted gene, 52494	within coordinates
Rr632154	regulatory region 632154	1792 bp distal
Rr632155	regulatory region 632155	1584 bp distal
Rr632156	regulatory region 632156	647 bp distal
Rr632157	regulatory region 632157	within coordinates
Rr632158	regulatory region 632158	159 bp proximal
Rr632159	regulatory region 632159	314 bp proximal
Tssr61448	transcription start site region 61448	163 bp downstream
Tssr61449	transcription start site region 61449	1427 bp downstream
Tssr61450	transcription start site region 61450	1501 bp downstream
Vamp5	vesicle-associated membrane protein 5	Intron