rs6218400 SNP Detail

Summary

• ID
  rs6218400
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  116
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:170284046 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TCTTTGCTAT CTTGGCTCAG
  AGACCACACC AGATCCAAGT TTCTTAAGCT ATGAAACCCA TCTCCATGGT CACATGTACT
  GTGCAAGAGG GTTTCTGTGT AGTCACACTC TGAGCTTTAT TGAGCACCTG GAGTGGCAAT
  GATTGTTGTC TGGAAACCTT TCTCCAAATT GTGATTTGTT TCAATTTGAT TACAAGAAAC
  R
  ACCTGGTATC GGAGCCAACG TTTGATCCAG CCTGCCTGAC TTAGGCCAGT TGCCCTGAGG
  TCTCCTTCTC ACCTCTTCAT GGTCCTGATG GCCATGACAC CTGCATGGAC CCCAGGACTT
  AAGATGAACT TGATGTAAAA TCTTCTTGGC TGCTGTTGGC AAGTATCCAT GGTTTGTGGG
  ACACAGACCT GCTGCAACTT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	C57BL/6J	CZECHII/EiJ
ss8624078	WI_WGS_2_171454078	WI	MOUSE	f	SNP	G	A
SNP Consensus Information
SNP					Consensus Type	C57BL/6J	CZECHII/EiJ
rs6218400					SNP	G	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:170284046 () rs orientation: forward

Symbol	Name	Function Class
Gm74953	predicted gene, 74953	within coordinates
Rr571442	regulatory region 571442	364 bp proximal
Rr571443	regulatory region 571443	524 bp proximal
Rr571444	regulatory region 571444	599 bp proximal