rs6218197 SNP Detail

Summary

• ID
  rs6218197
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  116
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:131518106 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GAAAATGCAG TGCATGGAAA
  TGCCAGTGGC TTTGAAAAAA AAATAGTCGA GGTGGTTATG AACATTTTAG AGATATTTGA
  ACACACCCAA GAATTATGTG TATATATGCA GAGGTGTTAG CTTTCTGTGC TGTATAGCAA
  ATAATGCCAA ATCCTAAGGT CCAAGGAGAG CAAGCATTGA ATATTTTATA GTTTCTATGC
  R
  TCAGGAATTA AACATGGTTG CAGCTTGTTT GACTAGAGCT GTTGGACTCC TCCGCAGTGA
  ATATACTCGG TGCCGCAGAC TCTGCTCTGA AGACTTGAAT GGAGCATAGC ATAGTGTCCT
  CCCAAGGCCT GACTGTTAGG CTGCCTGAAC ATTCTTATGT CATCATAGAA TGACTAGACA
  GTTGTCTCAG AGCAGAGAGA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	C57BL/6J	CZECHII/EiJ
ss8623874	WI_WGS_3_132298776	WI	MOUSE	f	SNP	G	A
SNP Consensus Information
SNP					Consensus Type	C57BL/6J	CZECHII/EiJ
rs6218197					SNP	G	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:131518106 () rs orientation: forward

Symbol	Name	Function Class
Rr585383	regulatory region 585383	732 bp proximal
Rr585384	regulatory region 585384	800 bp proximal