rs6217244 SNP Detail

Summary

• ID
  rs6217244
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  116
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr6:55782585 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GGAGAGCGTC CAAAGTGATG
  GCAGCTGACG CGAGAGCTGT ATTTCAGGAT CTTTCACCCA CTTGCACATT TGTCACTTGG
  AGATGCTAAC AAAGGCCCAC AGTGGAGATC TGCTGTCTTG CCATTGAGCC TCTCTATGAG
  GGCATGGCAA TTAAACAAAG AAGCCAGAAG CATGAGAAAC CAAACAACAG GAGGCTGACT
  R
  TATGGTGGAG GTCAGTGCAC ATTAGTGAAC TCAGTTGATG CCATTCCAGA ACATTCTCAT
  TTTCCTCTTG GCATAGAGCT TACTCTGAGG ATCCCCATTA TCTGGGACAG CAGCAACCAT
  CAGTATCTGC CCTGCTTGGC CTCTACTGTC AGGGACCTGT TCTGTTCAAG TAATGATGAT
  AAACTCACTC AACAAGTTCC                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeJ	C57BL/6J	C57BL/10J	C57BLKS/J	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	DDK/Pas	FVB/NJ	I/LnJ	JF1/Ms	KK/HlJ	LG/J	LP/J	MA/MyJ	MAI/Pas	MOLF/EiJ	MSM/Ms	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZW/LacJ	PERA/EiJ	PL/J	PWD/Ph	PWD/PhJ	RIIIS/J	SEA/GnJ	SEG/Pas	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss8622920	WI_WGS_6_56211957	WI	MOUSE	f	SNP									G									A
ss16376688	06.055.862	TWGNF	TWGNF-Mouse-2	f	SNP	A	A	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	A	G	G	G	G	G	A	A	G	A	G	A	A	A	G	G	A	A	G	G	A		G	G	G	G	G	G	G	G	G	G
ss45956586	mCV24070689	ABI	CRAMUS_MOUSE	f	SNP	A	A	G						G											G
ss47920862	NES11636441	PERLEGEN	MM_PANEL2	f	SNP	A		G	G	G	G		G							G					G		G			A					A		G			A				A									G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeJ	C57BL/6J	C57BL/10J	C57BLKS/J	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	DDK/Pas	FVB/NJ	I/LnJ	JF1/Ms	KK/HlJ	LG/J	LP/J	MA/MyJ	MAI/Pas	MOLF/EiJ	MSM/Ms	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZW/LacJ	PERA/EiJ	PL/J	PWD/Ph	PWD/PhJ	RIIIS/J	SEA/GnJ	SEG/Pas	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs6217244					SNP	A	A	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	A	G	G	G	G	G	A	A	G	A	G	A	A	A	G	G	A	A	G	G	A	A	G	G	G	G	G	G	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47920862	NES11636441	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:55782585 () rs orientation: forward

Symbol	Name	Function Class
Gm38820	predicted gene, 38820	880 bp upstream
Gm66822	predicted gene, 66822	within coordinates
Rr631022	regulatory region 631022	932 bp distal
Rr631023	regulatory region 631023	1308 bp distal
Rr631024	regulatory region 631024	within coordinates