rs6216683 SNP Detail

Summary

• ID
  rs6216683
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  116
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr6:55782493 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AAAGAAAGAT TCTCATCATT
  ACTGAAAGAA ATGGCTTCGA GAAGGGCAAG AGGAAAACAG CAGAGCGAGG AGGCTGAGCG
  GAGTTGCTGC CAGGAGAGCG TCCAAAGTGA TGGCAGCTGA CGCGAGAGCT GTATTTCAGG
  ATCTTTCACC CACTTGCACA TTTGTCACTT GGAGATGCTA ACAAAGGCCC ACAGTGGAGA
  K
  CTGCTGTCTT GCCATTGAGC CTCTCTATGA GGGCATGGCA ATTAAACAAA GAAGCCAGAA
  GCATGAGAAA CCAAACAACA GGAGGCTGAC TGTATGGTGG AGGTCAGTGC ACATTAGTGA
  ACTCAGTTGA TGCCATTCCA GAACATTCTC ATTTTCCTCT TGGCATAGAG CTTACTCTGA
  GGATCCCCAT TATCTGGGAC                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	CZECHII/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss8622359	WI_WGS_6_56211865	WI	MOUSE	f	SNP								T		G
ss45947438	mCV24070503	ABI	CRAMUS_MOUSE	f	SNP	G	G	T					T			T
ss47920856	NES11636437	PERLEGEN	MM_PANEL2	f	SNP	G		T	T	T	T	T		T		T	T	G	G	T	G	G	T
ss133216128	ENSMUSSNP3889858	ENSEMBL	ENSEMBL_Sanger	f	SNP		G	T								T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	CZECHII/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs6216683					SNP	G	G	T	T	T	T	T	T	T	G	T	T	G	G	T	G	G	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47920856	NES11636437	PERLEGEN	MM_PANEL	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:55782493 () rs orientation: forward

Symbol	Name	Function Class
Gm38820	predicted gene, 38820	788 bp upstream
Gm66822	predicted gene, 66822	within coordinates
Rr631022	regulatory region 631022	840 bp distal
Rr631023	regulatory region 631023	1216 bp distal
Rr631024	regulatory region 631024	within coordinates