rs6216387 SNP Detail

Summary

• ID
  rs6216387
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  116
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr6:72356765 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GCCTCCAGTT CCCTAGAGAT
  GAGGCCATCC AGGCATTGCC ACCCCTAGCC AGGCCACATC CATCCCATCT TAGAGTACTA
  AACTTGCTTC CAGTCTGGCC ACCTTCCCAG GAGCCCTGGA AGGTGGGATC CAGGCATCAG
  TGGTCCCTGA CACTTTTGTC TTGGAAATGG CAAGTCTGCA GCAGGAGTGA ATGTAGGTGA
  S
  TCAACTCATG ATTATGTTAC TAGGTAGAGG TTAGGAAAGA GTCAGCAGGC TGGGTCACAG
  GGATAACTTC ATGGAACTTT TATAGTAAAC AACTTATTTT CTCTTTTCCC CCAGGGAAGT
  GTTTATCTGT CAGCACGTCA GCACGGGGCC TCTACCAGGC ATCTGCTCAG GTTTCCAACC
  CTTGGGCCAG CTCTGGCTCC                                            
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	CZECHII/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss8622063	WI_WGS_6_73256329	WI	MOUSE	f	SNP							C		G
ss47979212	NES11920593	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C		C		C	C	C	C	C	C	G	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	CZECHII/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs6216387					SNP	C	C	C	C	C	C	C	C	G	C	C	C	C	C	C	G	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47979212	NES11920593	PERLEGEN	MM_PANEL	f	SNP	C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:72356765 () rs orientation: forward

Symbol	Name	Function Class
Gm52494	predicted gene, 52494	within coordinates
Rr632154	regulatory region 632154	1321 bp distal
Rr632155	regulatory region 632155	1113 bp distal
Rr632156	regulatory region 632156	176 bp distal
Rr632157	regulatory region 632157	within coordinates
Rr632158	regulatory region 632158	630 bp proximal
Rr632159	regulatory region 632159	785 bp proximal
Tssr61448	transcription start site region 61448	634 bp downstream
Tssr61449	transcription start site region 61449	1898 bp downstream
Tssr61450	transcription start site region 61450	1972 bp downstream
Vamp5	vesicle-associated membrane protein 5	Intron