rs6214475 SNP Detail

Summary

• ID
  rs6214475
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  116
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr7:4526142 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        AGGAC CCATCCCCCA CCCTCACCCC
  Y
  ACCCCCCAAA TAGTACAACC GAGAG                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	CZECHII/EiJ
ss8620147	WI_WGS_7_3879026	WI	MOUSE	f	SNP				T	C
ss46139247	mCV22879958	ABI	CRAMUS_MOUSE	f	SNP	T	T	C	T
ss148179437	ENSMUSSNP1880469	ENSEMBL	ENSEMBL_Sanger	f	SNP		T	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	CZECHII/EiJ
rs6214475					SNP	T	T	C	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:4526142 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Dnaaf3	dynein, axonemal assembly factor 3			mRNA-UTR
Rr641975	regulatory region 641975			1693 bp distal
Rr641976	regulatory region 641976			125 bp distal
Rr641977	regulatory region 641977			1257 bp proximal
Tnni3	troponin I, cardiac 3			Intron
				mRNA-UTR
Tssr64336	transcription start site region 64336			1467 bp downstream
Tssr64337	transcription start site region 64337			1298 bp downstream
Tssr70484	transcription start site region 70484			1240 bp upstream
Tssr70485	transcription start site region 70485			694 bp upstream
Tssr70486	transcription start site region 70486			331 bp upstream
Tssr70487	transcription start site region 70487			314 bp upstream
Tssr70488	transcription start site region 70488			1194 bp downstream