rs6211954 SNP Detail

Summary

• ID
  rs6211954
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  116
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr19:5125058 (GRCm39)
• SNP Orientation to the Genome
  reverse

• SNP Reference Flanking Sequence

                                              ACAAAAACCC TAACTAAGAC
  AGACACCCAC CAGTGCCCAG AGTGGTCTTG CTTTAGGGTA TAACTTTAAC TTTTTCAAAC
  CTCATTTTTA ATGATGGTTC TTAAATGCTT TAACTTCCCC TTTAGCCCAC CACCCACCAG
  AGGTAGTGGG AAAGAAAGGG TATGGTGGGG AGTGGACCTG TTTAGAAAGG TTCTTTGGAG
  S
  GACTCCAGTC TATGTTGTCT GGAAATCAGC AATTGAGTTC ACAGGCTAGA AGACAGTGGC
  AGCTAGATCC ACTTGAAACA CTTCACAGAT ACACCAGTTT GGTAGAGTCG GGTTAGCAAC
  AGCGGTGACA CGACCTAGCA GAGATAGCCA GGCGTGAGCC TCGGTGTAAG TCAGTAGGGG
  AAGCAGGAGG AGTACTCAGC                                            
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	C57BL/6J	CZECHII/EiJ
ss8617620	WI_WGS_19_5746506	WI	MOUSE	f	SNP	G	C
SNP Consensus Information
SNP					Consensus Type	C57BL/6J	CZECHII/EiJ
rs6211954					SNP	G	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr19:5125058 () rs orientation: reverse

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Gm46658	predicted gene, 46658			within coordinates
Rr405801	regulatory region 405801			1493 bp downstream
Rr542922	regulatory region 542922			1569 bp distal
Rr542923	regulatory region 542923			1688 bp distal
Rr542924	regulatory region 542924			1300 bp proximal
Tmem151a	transmembrane protein 151A			Intron
				Noncoding-Transcript-Variant