rs6211756 SNP Detail

Summary

• ID
  rs6211756
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  116
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:27317905 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GAGCTAGAAG AGAGGAAAGT
  GACCAGTTTC CAAGAGCCGA GCTTTTGTGG GCGGTGTTCT GTCAGCCCCT GCCTCTCTCA
  GTTTACCTGG GCCAGGGAAG GATGACAGAT CTGTCCCCTG CACCCAGGGA AGTCCCTCCC
  AGAAAGGCCT CTCTCTGCAG GAAGTCCCAT CACCTGCCCC ACCTAAGGAG GAAGCATGAA
  M
  CCTAATCCTA GAGATCCGGC AGAGAAGCCA GGTAGAGCCT TCAGCCCCTC TACTTCACCT
  CTGAATAGCT TCAGGGGAAG GACCTCCTGC GGACTGGGGG TTAAATCGTC CAAAGCACAG
  GGCTACAGGC AGACCCTCCA GCATCTCCCT AAGAGTCATT CAACACCCTG CACCAAAGGG
  AGGAAAAAGA AAGAAGGAAA                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	C57BL/6J	CZECHII/EiJ
ss8617422	WI_WGS_2_27730416	WI	MOUSE	f	SNP	C	A
SNP Consensus Information
SNP					Consensus Type	C57BL/6J	CZECHII/EiJ
rs6211756					SNP	C	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:27317905 () rs orientation: forward

Symbol	Name	Function Class
Cpgi11368	CpG island 11368	352 bp distal
Rr553546	regulatory region 553546	871 bp distal
Rr553547	regulatory region 553547	1081 bp distal
Rr553548	regulatory region 553548	370 bp distal
Rr553549	regulatory region 553549	394 bp proximal
Tssr23213	transcription start site region 23213	1358 bp upstream
Tssr23214	transcription start site region 23214	1330 bp upstream
Tssr23215	transcription start site region 23215	1280 bp upstream
Tssr23216	transcription start site region 23216	832 bp upstream
Vav2	vav 2 oncogene	860 bp upstream