rs6210741 SNP Detail

Summary

• ID
  rs6210741
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  116
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:27317737 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GTGTCCTGAG GACATTGTGA
  CAGTGGGAGG GACTTCAAAA GCATAAATAA CTGATTTTTG TGATTAAAAT TAATTTGCTC
  TGGACAGTAT CAGGAGCTGT GGGTTCTTGG TAAAGAAGAA GGGAACCCCA CAAAGCCAAG
  TCTTCTATGA GACTGGTGTC ATGAAAGGGA GCTAGAAGAG AGGAAAGTGA CCAGTTTCCA
  W
  GAGCCGAGCT TTTGTGGGCG GTGTTCTGTC AGCCCCTGCC TCTCTCAGTT TACCTGGGCC
  AGGGAAGGAT GACAGATCTG TCCCCTGCAC CCAGGGAAGT CCCTCCCAGA AAGGCCTCTC
  TCTGCAGGAA GTCCCATCAC CTGCCCCACC TAAGGAGGAA GCATGAACCC TAATCCTAGA
  GATCCGGCAG AGAAGCCAGG                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	C57BL/6J	CZECHII/EiJ
ss8616406	WI_WGS_2_27730248	WI	MOUSE	f	SNP	A	T
SNP Consensus Information
SNP					Consensus Type	C57BL/6J	CZECHII/EiJ
rs6210741					SNP	A	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:27317737 () rs orientation: forward

Symbol	Name	Function Class
Cpgi11368	CpG island 11368	184 bp distal
Rr553546	regulatory region 553546	703 bp distal
Rr553547	regulatory region 553547	913 bp distal
Rr553548	regulatory region 553548	202 bp distal
Rr553549	regulatory region 553549	562 bp proximal
Tssr23213	transcription start site region 23213	1190 bp upstream
Tssr23214	transcription start site region 23214	1162 bp upstream
Tssr23215	transcription start site region 23215	1112 bp upstream
Tssr23216	transcription start site region 23216	664 bp upstream
Vav2	vav 2 oncogene	692 bp upstream