rs6209621 SNP Detail

Summary

• ID
  rs6209621
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  116
• Last Updated in dbSNP Build
  116
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:173636270 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                                         AGGCATTAAC
  CGGAATGGTC TCCCAGTACA GGGCCCCAAG GCTAGTCAGG TACAGGTGAG ACCCACTTAC
  TGGTTGTCAG CTGTCTTTGC CCTCAGAGTG GCCTCTTGGG TGTCCTTGGA CTTAGAAAGC
  AAAGTCACCA TCTTCCCTGA GGGGNCCTGA GCCCACCAAT GGCCTGAAGT TTGTAAAGCA
  GCCTCCAGCC CTGTCCAGTC ACCTCCTCAT GTTGGTCTTC CTCTCCCTCC TTCCCTTCTG
  Y
  TCTAGACAGG AAGTTGCAAA GATTCTCTAG GCTGAGGTCC TGATGCCCCC CCAACTCCCA
  GACTCCCCGT AAACACACAC TTGCTGAAAG GACGAGAAAC CNACTGACGT ATCTAGGTGG
  GTTAGAAGAA GCCCTGCCNA GGTAGCCTGC CTGGCCTAGT GCTGGGGGTT TTGCTGAACC
  CCTCCTGCCA CTGTTTGGCA GACAGTGACA CTCAGAGGCT GGGTGGCCTG CCACAGTTGT
  CCACAGTTGC                                                       
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	C57BL/6J	CZECHII/EiJ
ss8615280	WI_WGS_2_175033984	WI	MOUSE	f	SNP	C	T
SNP Consensus Information
SNP					Consensus Type	C57BL/6J	CZECHII/EiJ
rs6209621					SNP	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:173636270 () rs orientation: forward

Symbol	Name	Function Class
Gm14371	predicted gene 14371	within coordinates
Gm75809	predicted gene, 75809	within coordinates
Rr572034	regulatory region 572034	1714 bp distal
Rr572035	regulatory region 572035	581 bp proximal