rs6209520 SNP Detail

Summary

• ID
  rs6209520
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  116
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:154740718 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AATTAAATTG CACAATAATG
  GTTAATTTTA TTAGCATTTT CCTTGTAATA GTCATTTTGC TACTACTAAA TATGCTTCGT
  TCTTTAAAAT CTCCCAAATC ACCTAACAAA GCAGATAATT ATGTTTACTC CAGCTTTTCT
  TTTAAGGGAG GAAGGGACAC TAGGGATAAG CCTCAGCACC TTGTGCATGC TCTGAAATAG
  Y
  GAGCCACGCC TACATTTCAC CCCACCCCCC ACCCCACCCC CAGCTCTGCT TTGGAGATGA
  GAAAACTGGA GGGCAGAGGG AAAGATCAGG TGGGTTTTTT TTTTTTTTTT GAACATGTAG
  AGGTCGCCAG AAAGTCTTAG AGTTGACAGA TGAGCACCCC TAGTTTAGCT TCTGGGCCGC
  TGCTGGCACT CCTGAGGCCG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	C57BL/6J	CZECHII/EiJ
ss8615177	WI_WGS_3_155633972	WI	MOUSE	f	SNP	C	T
SNP Consensus Information
SNP					Consensus Type	C57BL/6J	CZECHII/EiJ
rs6209520					SNP	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:154740718 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Rr587914	regulatory region 587914			544 bp distal
Tnni3k	TNNI3 interacting kinase			Intron
				Noncoding-Transcript-Variant