rs6209496 SNP Detail

Summary

• ID
  rs6209496
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  116
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:154740701 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AAAAATTTGT TCTTTTAAAT
  TAAATTGCAC AATAATGGTT AATTTTATTA GCATTTTCCT TGTAATAGTC ATTTTGCTAC
  TACTAAATAT GCTTCGTTCT TTAAAATCTC CCAAATCACC TAACAAAGCA GATAATTATG
  TTTACTCCAG CTTTTCTTTT AAGGGAGGAA GGGACACTAG GGATAAGCCT CAGCACCTTG
  Y
  GCATGCTCTG AAATAGCGAG CCACGCCTAC ATTTCACCCC ACCCCCCACC CCACCCCCAG
  CTCTGCTTTG GAGATGAGAA AACTGGAGGG CAGAGGGAAA GATCAGGTGG GTTTTTTTTT
  TTTTTTTGAA CATGTAGAGG TCGCCAGAAA GTCTTAGAGT TGACAGATGA GCACCCCTAG
  TTTAGCTTCT GGGCCGCTGC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	CZECHII/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
ss8615153	WI_WGS_3_155633955	WI	MOUSE	f	SNP							T		C
ss47473780	NES10314522	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T		C		T	T	T	C	T	T	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	CZECHII/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
rs6209496					SNP	T	T	T	T	T	T	T	C	C	T	T	T	C	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47473780	NES10314522	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:154740701 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Rr587914	regulatory region 587914			527 bp distal
Tnni3k	TNNI3 interacting kinase			Intron
				Noncoding-Transcript-Variant