rs6208372 SNP Detail

Summary

• ID
  rs6208372
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  116
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:154740501 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GGTATCAACT GGTTGTTTCG
  CTCAATGCGT ATGTGAGCAA ATACTTGCAT AAGAGAATTT TACTCTTAAT AAAGCATGAG
  CAGAAATCTA TGTATAAACT AAGACTTTTG ATGTAATTCT CAACCTTTTT ACTGTTACGA
  ACCAAATGAC AGACCCATAT CATTTTATTT TCTGTGTAAA ATAGATGATA TACAAGTGTC
  R
  AAAATTTGTT CTTTTAAATT AAATTGCACA ATAATGGTTA ATTTTATTAG CATTTTCCTT
  GTAATAGTCA TTTTGCTACT ACTAAATATG CTTCGTTCTT TAAAATCTCC CAAATCACCT
  AACAAAGCAG ATAATTATGT TTACTCCAGC TTTTCTTTTA AGGGAGGAAG GGACACTAGG
  GATAAGCCTC AGCACCTTGT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	C57BL/6J	CZECHII/EiJ
ss8614026	WI_WGS_3_155633755	WI	MOUSE	f	SNP	A	G
SNP Consensus Information
SNP					Consensus Type	C57BL/6J	CZECHII/EiJ
rs6208372					SNP	A	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:154740501 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Rr587914	regulatory region 587914			327 bp distal
Tnni3k	TNNI3 interacting kinase			Intron
				Noncoding-Transcript-Variant