rs6208298 SNP Detail

Summary

• ID
  rs6208298
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  116
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:154740459 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ATATTTGCAT ATGGATGTAT
  TTCCAAAGAG CATATTTTCT ATGGTATCAA CTGGTTGTTT CGCTCAATGC GTATGTGAGC
  AAATACTTGC ATAAGAGAAT TTTACTCTTA ATAAAGCATG AGCAGAAATC TATGTATAAA
  CTAAGACTTT TGATGTAATT CTCAACCTTT TTACTGTTAC GAACCAAATG ACAGACCCAT
  W
  TCATTTTATT TTCTGTGTAA AATAGATGAT ATACAAGTGT CAAAAATTTG TTCTTTTAAA
  TTAAATTGCA CAATAATGGT TAATTTTATT AGCATTTTCC TTGTAATAGT CATTTTGCTA
  CTACTAAATA TGCTTCGTTC TTTAAAATCT CCCAAATCAC CTAACAAAGC AGATAATTAT
  GTTTACTCCA GCTTTTCTTT                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	C57BL/6J	CZECHII/EiJ
ss8613952	WI_WGS_3_155633713	WI	MOUSE	f	SNP	A	T
SNP Consensus Information
SNP					Consensus Type	C57BL/6J	CZECHII/EiJ
rs6208298					SNP	A	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:154740459 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Rr587914	regulatory region 587914			285 bp distal
Tnni3k	TNNI3 interacting kinase			Intron
				Noncoding-Transcript-Variant