rs6208090 SNP Detail

Summary

• ID
  rs6208090
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  116
• Last Updated in dbSNP Build
  116
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr6:115511424 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                                         AGCACCCCAT
  ACACATATCC ACAAACAATC GAGCGAAACC TTACAACTTT AACATAATTA TTTCTATTAG
  AATGGAAATA TAAAAACTAA AATCTTGAAG CTACTTGAAG CCCTTATCAG GAAGCAAGGG
  TGGTAGTTAT AAAATTCTAA AACTTAGGAC ACGCTATACT CAAAGCATTA TGCTGTCTGA
  TGAGGCCGTG GAGTAAGGTC CAATAAACAC GCGTGATGAC CAGGTAGAGT ACAGCTCCGG
  K
  CAccgagctc tgctatccta tagctgtgtg acccagaaca agttacANCT AGGAGTCATC
  TCCCTGTCCC CGAGAATTGC TGTGGAGCAC AGTCAAGTTG GGAGTGTGTG ACTACTGCCA
  GCCCTTTCCT CTTAGTTGCG ATGAGAGCAA GCTGAAGAGG GACTAGACAA GAGGTACTGA
  ACCTCAATCT CTTTCTCTGC CAATGCGAAA AGGGGAAACT GAGCTCTCCT GCAGCCAGCA
  TGCTGGATAT                                                       
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	C57BL/6J	CZECHII/EiJ
ss8613742	WI_WGS_6_116318016	WI	MOUSE	f	SNP	T	G
SNP Consensus Information
SNP					Consensus Type	C57BL/6J	CZECHII/EiJ
rs6208090					SNP	T	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:115511424 () rs orientation: forward

Symbol	Name	Function Class
Gm36355	predicted gene, 36355	within coordinates
Rr636981	regulatory region 636981	195 bp proximal