rs6207848 SNP Detail

Summary

• ID
  rs6207848
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  116
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr6:31105016 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ATTTAAAAAA AACCCACTCA
  GGACACATAT CTGAAATGAC ACCATCTTCC TATATTTCTT TTAAAAATTT TTTTTAAACG
  TGTTATGTGC CTGCATGAGT TTATGTGCAC CAGGGTCAGA GGCCAAAAGA GGACCTCGAA
  CACCCTGGCA GTTCAAACCT GGATTCTCTG CTGGAGCAGT CAGCACTCAG TCATGAGCCA
  Y
  GCTCCAGCCC CACTCTGTAT CTCTTTGCTC CATACTGATT TCCACAGGTC TGCAACCAAG
  CAGAAGCCTT GGGAGTTTCC AACTTCTCTC CTCCATCCTC ACTAGATATT TCAGTCCAAA
  TGGTGGGGAA GCCTCGTCTT TACAACATAG ACTTAAGAAT GTTATGAAAT GTGAAGTATG
  GAAGCTTGTT CCTTCCATAA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	C57BL/6J	CZECHII/EiJ
ss8613499	WI_WGS_6_31281293	WI	MOUSE	f	SNP	T	C
SNP Consensus Information
SNP					Consensus Type	C57BL/6J	CZECHII/EiJ
rs6207848					SNP	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:31105016 () rs orientation: forward

Symbol	Name	Function Class
Gm67790	predicted gene, 67790	within coordinates
Lncpint	long non-protein coding RNA, Trp53 induced transcript	within coordinates
Rr399602	regulatory region 399602	1333 bp downstream
Rr627896	regulatory region 627896	1589 bp distal
Rr627897	regulatory region 627897	1070 bp distal
Rr627898	regulatory region 627898	1499 bp distal
Rr627899	regulatory region 627899	980 bp proximal
Tssr55453	transcription start site region 55453	1339 bp downstream
Tssr60158	transcription start site region 60158	1740 bp upstream
Tssr60159	transcription start site region 60159	1578 bp upstream
Tssr60160	transcription start site region 60160	1544 bp upstream
Tssr60161	transcription start site region 60161	1520 bp upstream
Tssr60162	transcription start site region 60162	1351 bp upstream