rs6207523 SNP Detail

Summary

• ID
  rs6207523
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  116
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:100727304 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTAAGACCAC AGCTGCTTTC
  TTTGTTCTCC ATTGCGTAAT TCAGACTGAG CTGGGGGTTC CCCTAACCTG AGGTTATGTG
  TGTGGCTGAA ATCAGCCACA GGTTAGCTGG GCGCTGGTAT TTCAGGGGTC CCTGCTGGAA
  TGGCTCATCT CATCCCCCTT CACGCAGTGG CAGAAGAGTG CTCGGAGGCC ACATAAGACA
  Y
  CCCAAATGCT TAAGTACTCT ACCTGTACCA TGTCTGCTAA TGTTACAAAG ACCAAGTGTC
  AGGGCAAGAT TGCTCAAAGG CACCAAGAAA GGGAAGCATG ACCTGAAGGT CATTGGCAGA
  AGACGCCCCA ACAGCTTTCC TGAGAAACTC CAGGCAAATG GCTTGAGACT ATGAGAGATA
  CAATTTATAG ATAAGCTAGA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	C57BL/6J	CZECHII/EiJ
ss8613174	WI_WGS_3_100921972	WI	MOUSE	f	SNP	T	C
SNP Consensus Information
SNP					Consensus Type	C57BL/6J	CZECHII/EiJ
rs6207523					SNP	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:100727304 () rs orientation: forward

Symbol	Name	Function Class
Gm32720	predicted gene, 32720	404 bp downstream
Rr581909	regulatory region 581909	623 bp distal
Rr581910	regulatory region 581910	within coordinates
Rr581911	regulatory region 581911	200 bp distal
Rr581912	regulatory region 581912	877 bp proximal
Rr581913	regulatory region 581913	1532 bp proximal
Rr581914	regulatory region 581914	1668 bp proximal