rs6207326 SNP Detail

Summary

• ID
  rs6207326
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  116
• Last Updated in dbSNP Build
  116
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr4:141864125 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                                         TGTTGTTTGA
  AAgccagacc tgagagtgct tgcttgtgat accagctacc agagagtatg aggcaggaga
  atttcaagta taagaccagc ctaggcaact tactgagtcc tgtctcaaaa taaaaataaa
  TAGATAAATA AAGAGTCCTG GGCAATGAAA CCTGGTAGTA CAGCACGTGT CTAACACGNG
  TGAGCATCGG TTTCAATCCC CNGTACATTT CCCCAGGGCA AGATTCCACG ATGCAGCCAG
  S
  CCTCTCCTGG GTTCCCAGAG CACAAAGCCA ACAGCAGTGG GCCAGTGCCA CATTGTNGAG
  GTGTGGGGCG CAGCTCTGGG CCACTTGCTG ATTCATCCCT TACGGTTGGG GTGCCATATG
  CCTTGCCCTG CGGGAGAGGA GCTGGCTCTC AAGTCCATGG CTCAGGTATG ACAGGACTGG
  GCTTGGCCCA CAGGACAAAT GCAGGTCATA CTGGTGCCGT TCTGGCCAGG AGGAAGGACA
  CAGAGCTTGC                                                       
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	C57BL/6J	CZECHII/EiJ
ss8612977	WI_WGS_4_139879656	WI	MOUSE	f	SNP	C	G
SNP Consensus Information
SNP					Consensus Type	C57BL/6J	CZECHII/EiJ
rs6207326					SNP	C	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:141864125 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Kazn	kazrin, periplakin interacting protein			Intron
				Noncoding-Transcript-Variant
Rr377314	regulatory region 377314			within coordinates
Rr604003	regulatory region 604003			40 bp proximal
Rr604004	regulatory region 604004			1363 bp proximal