rs6207263 SNP Detail

Summary

• ID
  rs6207263
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  116
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr4:141864086 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        CGAGT GAGCATCGGT TTCAATCCCC
  Y
  GTACATTTCC CCAGGGCAAG ATTCC                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	CZECHII/EiJ	DBA/2J	LG/J	SM/J
ss8612914	WI_WGS_4_139879617	WI	MOUSE	f	SNP				T	C
ss45721429	mCV23733013	ABI	CRAMUS_MOUSE	f	SNP	T	T	C	T		C
ss147749647	ENSMUSSNP2259161	ENSEMBL	ENSEMBL_Sanger	f	SNP		T	C			C
ss321393030	CHEV_4_141692690	CHEVERUD	SCREENING_POP	f	SNP							C	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	CZECHII/EiJ	DBA/2J	LG/J	SM/J
rs6207263					SNP	T	T	C	T	C	C	C	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:141864086 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Kazn	kazrin, periplakin interacting protein			Intron
				Noncoding-Transcript-Variant
Rr377314	regulatory region 377314			within coordinates
Rr604003	regulatory region 604003			79 bp proximal
Rr604004	regulatory region 604004			1402 bp proximal