rs6207221 SNP Detail

Summary

• ID
  rs6207221
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  116
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr6:31104877 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TCTACATGGA CTCCCCAACT
  CAGCTACCTG ACTCGGGCAA CAGGCATCCA AGTGAATGTA TGCCCTACAC AAGTGGTGCT
  TGCTCTGAGT ACCTAACTAC TTCCAACACT CTGTGGACAT AAAAATTCTG TAAATTGAGA
  TTTAAAAAAA ACCCACTCAG GACACATATC TGAAATGACA CCATCTTCCT ATATTTCTTT
  W
  AAAAATTTTT TTTAAACGTG TTATGTGCCT GCATGAGTTT ATGTGCACCA GGGTCAGAGG
  CCAAAAGAGG ACCTCGAACA CCCTGGCAGT TCAAACCTGG ATTCTCTGCT GGAGCAGTCA
  GCACTCAGTC ATGAGCCATG CTCCAGCCCC ACTCTGTATC TCTTTGCTCC ATACTGATTT
  CCACAGGTCT GCAACCAAGC                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	C57BL/6J	CZECHII/EiJ
ss8612872	WI_WGS_6_31281154	WI	MOUSE	f	SNP	T	A
SNP Consensus Information
SNP					Consensus Type	C57BL/6J	CZECHII/EiJ
rs6207221					SNP	T	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:31104877 () rs orientation: forward

Symbol	Name	Function Class
Gm67790	predicted gene, 67790	within coordinates
Lncpint	long non-protein coding RNA, Trp53 induced transcript	within coordinates
Rr399602	regulatory region 399602	1194 bp downstream
Rr627896	regulatory region 627896	1450 bp distal
Rr627897	regulatory region 627897	931 bp distal
Rr627898	regulatory region 627898	1360 bp distal
Rr627899	regulatory region 627899	1119 bp proximal
Tssr55453	transcription start site region 55453	1200 bp downstream
Tssr60158	transcription start site region 60158	1601 bp upstream
Tssr60159	transcription start site region 60159	1439 bp upstream
Tssr60160	transcription start site region 60160	1405 bp upstream
Tssr60161	transcription start site region 60161	1381 bp upstream
Tssr60162	transcription start site region 60162	1212 bp upstream