rs6206972 SNP Detail

Summary

• ID
  rs6206972
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  116
• Last Updated in dbSNP Build
  116
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:100727215 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                                         GTGCCGACAA
  TAGTNAAATG ACACAGGAAG TAGCTTCAGA AGCAGAGAAC ATCAGAGAGA AAGGCNGAGA
  GGGGTNAAGT GAGAGACTAG TGTGCCAATT ATCTACTGCT TCAGTAACAA CCTGCCCCCT
  AATGTAGTAC TAAGACCACA GCTGCTTTCT TTGTTCTCCA TTGCGTAATT CAGACTGAGC
  TGGGGGTTCC CCTAACCTGA GGTTATGTGT GTGGCTGAAA TCAGCCACAG GTTAGCTGGG
  Y
  GCTGGTNTTT CAGGGGTCCC TGCTGGAATG GCTCATCTCA TCCCCCTTCA CGCAGTGGCA
  GAAGAGTGCT CGGNNGCCAC ATAAGACANC CCAAATGCTT AAGTACTCTA CCTGTACCAT
  GTCTGCTAAT GTTACAAAGA CCAAGTGTCA GGGCAAGATT GCTCAAAGGC ACCAAGAAAG
  GGAAGCATGA CCTGAAGGTC NTTGGCAGAA GACGCCCCAA CAGCTTTCCT GAGAAACNCC
  AGGCAAATGG                                                       
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	C57BL/6J	CZECHII/EiJ
ss8612623	WI_WGS_3_100921883	WI	MOUSE	f	SNP	C	T
SNP Consensus Information
SNP					Consensus Type	C57BL/6J	CZECHII/EiJ
rs6206972					SNP	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:100727215 () rs orientation: forward

Symbol	Name	Function Class
Gm32720	predicted gene, 32720	493 bp downstream
Rr581909	regulatory region 581909	534 bp distal
Rr581910	regulatory region 581910	within coordinates
Rr581911	regulatory region 581911	111 bp distal
Rr581912	regulatory region 581912	966 bp proximal
Rr581913	regulatory region 581913	1621 bp proximal
Rr581914	regulatory region 581914	1757 bp proximal