rs6206524 SNP Detail

Summary

• ID
  rs6206524
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  116
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr6:115892810 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CAGGTTTTCT CTCTGCTGTG
  CCTTGCTAAA GTAGGTTGCC ATTTCCCAGC CAAAAGGAGT GTATCTCCCC GTGCTTATTT
  CAGGATGTAG CCTTGGTTAT TTATAGCCTG CGGCCTGAGA GGCACATCTC GGCAGCGAGG
  CATCCCAGAT GCTCCGATGA GTGGCCTGCC TCCCTCTTGA GCAGTCTCGT GTAAGCCCTG
  Y
  AGCCTCCCTG CTCCATGCTG ACTCCCTATG ACATGCGTGT GCTTTCATGG CCCTTAGCCT
  TCCACAAGGC CGGGAGGCAG GGAGAAGCAG TCCGGGTGCT GGAGCAGCTC ACGCACAATG
  CTGTGGTGGA GAGCAGGTTT AACGACGCTG CCTATTATTA CTGGATGCTG TCCATGCAGT
  GCCTCGACAT GGCTCAAGGT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	C3H/HeJ	C57BL/6J	CZECHII/EiJ	DBA/2J	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss8612174	WI_WGS_6_116703991	WI	MOUSE	f	SNP					C	T
ss48059531	NES11873225	PERLEGEN	MM_PANEL2	f	SNP	C	C	T	T			C	C	T	C	C	T	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	C3H/HeJ	C57BL/6J	CZECHII/EiJ	DBA/2J	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs6206524					SNP	C	C	T	T	C	T	C	C	T	C	C	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss48059531	NES11873225	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:115892810 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Ift122	intraflagellar transport 122			Intron
				mRNA-UTR
				Noncoding-Transcript-Variant
Rr637097	regulatory region 637097			458 bp distal
Tssr58330	transcription start site region 58330			4 bp downstream