rs6206441 SNP Detail

Summary

• ID
  rs6206441
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  116
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr6:115892765 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GAGTGGCGTC CAGTTCCCTG
  TGTGCAGTGC CAGGCTTCGG TGCTTCAGGT TTTCTCTCTG CTGTGCCTTG CTAAAGTAGG
  TTGCCATTTC CCAGCCAAAA GGAGTGTATC TCCCCGTGCT TATTTCAGGA TGTAGCCTTG
  GTTATTTATA GCCTGCGGCC TGAGAGGCAC ATCTCGGCAG CGAGGCATCC CAGATGCTCC
  R
  ATGAGTGGCC TGCCTCCCTC TTGAGCAGTC TCGTGTAAGC CCTGCAGCCT CCCTGCTCCA
  TGCTGACTCC CTATGACATG CGTGTGCTTT CATGGCCCTT AGCCTTCCAC AAGGCCGGGA
  GGCAGGGAGA AGCAGTCCGG GTGCTGGAGC AGCTCACGCA CAATGCTGTG GTGGAGAGCA
  GGTTTAACGA CGCTGCCTAT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

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SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	C57BL/6J	CZECHII/EiJ
ss8612091	WI_WGS_6_116703946	WI	MOUSE	f	SNP	G	A
SNP Consensus Information
SNP					Consensus Type	C57BL/6J	CZECHII/EiJ
rs6206441					SNP	G	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:115892765 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Ift122	intraflagellar transport 122			Intron
				mRNA-UTR
				Noncoding-Transcript-Variant
Rr637097	regulatory region 637097			413 bp distal
Tssr58330	transcription start site region 58330			within coordinates