rs6206408 SNP Detail

Summary

• ID
  rs6206408
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  116
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr6:115892745 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GTCTGGAGTG GAGTGGAGTG
  GAGTGGCGTC CAGTTCCCTG TGTGCAGTGC CAGGCTTCGG TGCTTCAGGT TTTCTCTCTG
  CTGTGCCTTG CTAAAGTAGG TTGCCATTTC CCAGCCAAAA GGAGTGTATC TCCCCGTGCT
  TATTTCAGGA TGTAGCCTTG GTTATTTATA GCCTGCGGCC TGAGAGGCAC ATCTCGGCAG
  Y
  GAGGCATCCC AGATGCTCCG ATGAGTGGCC TGCCTCCCTC TTGAGCAGTC TCGTGTAAGC
  CCTGCAGCCT CCCTGCTCCA TGCTGACTCC CTATGACATG CGTGTGCTTT CATGGCCCTT
  AGCCTTCCAC AAGGCCGGGA GGCAGGGAGA AGCAGTCCGG GTGCTGGAGC AGCTCACGCA
  CAATGCTGTG GTGGAGAGCA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	C57BL/6J	CZECHII/EiJ
ss8612057	WI_WGS_6_116703926	WI	MOUSE	f	SNP	C	T
SNP Consensus Information
SNP					Consensus Type	C57BL/6J	CZECHII/EiJ
rs6206408					SNP	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:115892745 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Ift122	intraflagellar transport 122			Intron
				mRNA-UTR
				Noncoding-Transcript-Variant
Rr637097	regulatory region 637097			393 bp distal
Tssr58330	transcription start site region 58330			2 bp upstream