rs6206354 SNP Detail

Summary

• ID
  rs6206354
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  116
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:100727040 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AAAACTCCAA GGCACACATA
  CATACGGTTG TATATGAATG CATCTATGTA ACATGCCTTA GCACAGTTCC AATTTAGAAA
  TGAGATACCA TTTCTTTGCT ACAGAGATTA GGGTTGACTT AGTGTGTGCC GACAATAGTG
  AAATGACACA GGAAGTAGCT TCAGAAGCAG AGAACATCAG AGAGAAAGGC GGAGAGGGGT
  R
  AAGTGAGAGA CTAGTGTGCC AATTATCTAC TGCTTCAGTA ACAACCTGCC CCCTAATGTA
  GTACTAAGAC CACAGCTGCT TTCTTTGTTC TCCATTGCGT AATTCAGACT GAGCTGGGGG
  TTCCCCTAAC CTGAGGTTAT GTGTGTGGCT GAAATCAGCC ACAGGTTAGC TGGGCGCTGG
  TATTTCAGGG GTCCCTGCTG                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	C57BL/6J	CZECHII/EiJ
ss8612003	WI_WGS_3_100921708	WI	MOUSE	f	SNP	A	G
SNP Consensus Information
SNP					Consensus Type	C57BL/6J	CZECHII/EiJ
rs6206354					SNP	A	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:100727040 () rs orientation: forward

Symbol	Name	Function Class
Gm32720	predicted gene, 32720	668 bp downstream
Gm40107	predicted gene, 40107	1971 bp upstream
Rr581909	regulatory region 581909	359 bp distal
Rr581910	regulatory region 581910	within coordinates
Rr581911	regulatory region 581911	43 bp proximal
Rr581912	regulatory region 581912	1141 bp proximal
Rr581913	regulatory region 581913	1796 bp proximal
Rr581914	regulatory region 581914	1932 bp proximal