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rs6205874 SNP Detail
Summary
  • ID
    rs6205874
  • Variation Type
    SNP
  • Alleles
    A/G
Genome Location and Flanking Sequence
  • Location
    Chr3:100726979 (GRCm39)
  • SNP Orientation to the Genome
    forward
  • SNP Reference Flanking Sequence
                                                CATGGTCCCT TGGTATTGCT
    TTCCTGTATT CAGGTTCAAT AACTTTTTTT TTAACTTTCT TAAAACTCCA AGGCACACAT
    ACATACGGTT GTATATGAAT GCATCTATGT AACATGCCTT AGCACAGTTC CAATTTAGAA
    ATGAGATACC ATTTCTTTGC TACAGAGATT AGGGTTGACT TAGTGTGTGC CGACAATAGT
    R
    AAATGACACA GGAAGTAGCT TCAGAAGCAG AGAACATCAG AGAGAAAGGC GGAGAGGGGT
    AAAGTGAGAG ACTAGTGTGC CAATTATCTA CTGCTTCAGT AACAACCTGC CCCCTAATGT
    AGTACTAAGA CCACAGCTGC TTTCTTTGTT CTCCATTGCG TAATTCAGAC TGAGCTGGGG
    GTTCCCCTAA CCTGAGGTTA                                            
    
    R = A/G
    

    Note: Sequence in lower case indicates low-complexity or repetitive sequence
    BLAST SNP flanking sequence against the mouse Genome
SNP Assays
and
SNP Consensus
Strain alleles of submitted assays, and consensus values for this SNP
Legend
Assay ID Submitter
SNP ID
Submitter
Handle
Population
ss orientation
Variation Type
C57BL/6J
CZECHII/EiJ
ss8611523 WI_WGS_3_100921647 WI MOUSE f SNP G A
SNP Consensus Information
SNP Consensus Type
C57BL/6J
CZECHII/EiJ
rs6205874 SNP G A
Gene/Marker
Associations
and
Function
Classes
MGI genes/markers associated with the SNP
Location: Chr3:100726979 () rs orientation: forward
Symbol Name Transcript Protein Function
Class
Allele Residue Codon
Position
AA
Position
Gm32720 predicted gene, 32720 729 bp downstream
Gm40107 predicted gene, 40107 1910 bp upstream
Rr581909 regulatory region 581909 298 bp distal
Rr581910 regulatory region 581910 within coordinates
Rr581911 regulatory region 581911 104 bp proximal
Rr581912 regulatory region 581912 1202 bp proximal
Rr581913 regulatory region 581913 1857 bp proximal
Rr581914 regulatory region 581914 1993 bp proximal

Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
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last database update
03/18/2025
MGI 6.24
The Jackson Laboratory