rs6205874 SNP Detail

Summary

• ID
  rs6205874
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  116
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:100726979 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CATGGTCCCT TGGTATTGCT
  TTCCTGTATT CAGGTTCAAT AACTTTTTTT TTAACTTTCT TAAAACTCCA AGGCACACAT
  ACATACGGTT GTATATGAAT GCATCTATGT AACATGCCTT AGCACAGTTC CAATTTAGAA
  ATGAGATACC ATTTCTTTGC TACAGAGATT AGGGTTGACT TAGTGTGTGC CGACAATAGT
  R
  AAATGACACA GGAAGTAGCT TCAGAAGCAG AGAACATCAG AGAGAAAGGC GGAGAGGGGT
  AAAGTGAGAG ACTAGTGTGC CAATTATCTA CTGCTTCAGT AACAACCTGC CCCCTAATGT
  AGTACTAAGA CCACAGCTGC TTTCTTTGTT CTCCATTGCG TAATTCAGAC TGAGCTGGGG
  GTTCCCCTAA CCTGAGGTTA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	C57BL/6J	CZECHII/EiJ
ss8611523	WI_WGS_3_100921647	WI	MOUSE	f	SNP	G	A
SNP Consensus Information
SNP					Consensus Type	C57BL/6J	CZECHII/EiJ
rs6205874					SNP	G	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:100726979 () rs orientation: forward

Symbol	Name	Function Class
Gm32720	predicted gene, 32720	729 bp downstream
Gm40107	predicted gene, 40107	1910 bp upstream
Rr581909	regulatory region 581909	298 bp distal
Rr581910	regulatory region 581910	within coordinates
Rr581911	regulatory region 581911	104 bp proximal
Rr581912	regulatory region 581912	1202 bp proximal
Rr581913	regulatory region 581913	1857 bp proximal
Rr581914	regulatory region 581914	1993 bp proximal