rs6205405 SNP Detail

Summary

• ID
  rs6205405
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  116
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr6:115892618 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GGGCTGTTCT CCATCTTTAG
  AATTTTGTCC TGAGGATTCG GTGTATAATT AATAGTGAAG GGATTTTGTG AACCACCAGG
  CTCCATAGTG GGACCTGCTA GTGCTACCCA GGAGTGAAAA AGTCTCAGTC TGGAGTGGAG
  TGGAGTGGAG TGGCGTCCAG TTCCCTGTGT GCAGTGCCAG GCTTCGGTGC TTCAGGTTTT
  M
  TCTCTGCTGT GCCTTGCTAA AGTAGGTTGC CATTTCCCAG CCAAAAGGAG TGTATCTCCC
  CGTGCTTATT TCAGGATGTA GCCTTGGTTA TTTATAGCCT GCGGCCTGAG AGGCACATCT
  CGGCAGCGAG GCATCCCAGA TGCTCCGATG AGTGGCCTGC CTCCCTCTTG AGCAGTCTCG
  TGTAAGCCCT GCAGCCTCCC                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	CZECHII/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss8611053	WI_WGS_6_116703799	WI	MOUSE	f	SNP							C		A
ss48059529	NES11873224	PERLEGEN	MM_PANEL2	f	SNP	C	C	A	C	C	A		A		C	C	C	A	C	C	A	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	CZECHII/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs6205405					SNP	C	C	A	C	C	A	C	A	A	C	C	C	A	C	C	A	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss48059529	NES11873224	PERLEGEN	MM_PANEL	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:115892618 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Ift122	intraflagellar transport 122			Intron
				Noncoding-Transcript-Variant
Rr637097	regulatory region 637097			266 bp distal
Tssr58330	transcription start site region 58330			129 bp upstream