rs6204309 SNP Detail

Summary

• ID
  rs6204309
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  116
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr4:135680707 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TCATCTGAAG GCTGCTAACA
  GAATATTGAC TTCCAGGCAG CTAGAATGAG GGTCTTATAG ACCACACCCA TAGTGACACA
  CCTATTCCAA CAGGGCCACA CCTTTTAACA GCACCACTCC CTGGGCCGAG CATATACAAA
  CCATCCCAGA ATTGCTGTTT CATAGCAAAC AATCCCTTTG ATAGCACCAG GCAATGCAGA
  R
  GGAGTGGCGC CCAGGGCCCC ACCAGAGAAG GTTCTTGGTA AGTGGCTTGT GACTGCAGGT
  ACCTCAGAGG TGGCAGTACT GACACAGGAG CTGCCAAGAT CACGCTGACC AGGATGTCCC
  CTGACCCCTC TCTGGTCAGG CAGATAAGAA AAGTATTGGA GGGGCTGGTG AGATGGCTCA
  GTGGGTAAGA GCACCCGACT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	C57BL/6J
ss8609953	WI_WGS_4_133540814	WI	MOUSE	f	SNP	G	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	C57BL/6J
rs6204309					SNP	G	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:135680707 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Hmgcl	3-hydroxy-3-methylglutaryl-Coenzyme A lyase			Coding-NonSynonymous
				Intron
				Noncoding-Transcript-Variant
				Noncoding-Transcript-Variant
Rr398602	regulatory region 398602			907 bp upstream
Rr602216	regulatory region 602216			1694 bp distal
Rr602217	regulatory region 602217			within coordinates
Rr602218	regulatory region 602218			942 bp proximal
Rr602219	regulatory region 602219			1043 bp proximal