rs6203606 SNP Detail

Summary

• ID
  rs6203606
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  116
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr6:78876534 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ACACAGCATA CCACACACAC
  ACACACACAC ACACACACAC ACACACACAC ACTAAGCATA TAAATAATAA TACAATGTAT
  TGTAATAAAA TTCTGTCAAA GAACTAACAA CAGCCACGAC CAAAACACCA AGAAGGTTGT
  GAATTCTACA AGATGGTTAT CATTTGAGAA CTCCAAGAAG TCCTCTATAT TAACCATATT
  Y
  GCAAGCTTCC TTCCCCCGCC CTCTAGAGTA AAGAATAAAG CTGCAGAGAG GACTCTCAGA
  CAATCCATAC TTCAAGGGAG ATTATGGGAC CAGTACAACT GCTAAGAAGA ATCAGGAAAA
  CAGCAGAGCT GCCTGGAAAA ACATTTGCAC CACAGTCACT TGTAAGGGAC ACTCTCCATC
  CTGTTGATCT TCCTCAGACT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	C57BL/6J	CZECHII/EiJ	LG/J	SM/J
ss8609250	WI_WGS_6_79796390	WI	MOUSE	f	SNP	T	C
ss321832867	CHEV_6_78849545	CHEVERUD	SCREENING_POP	f	SNP			C	T
SNP Consensus Information
SNP					Consensus Type	C57BL/6J	CZECHII/EiJ	LG/J	SM/J
rs6203606					SNP	T	C	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:78876534 () rs orientation: forward

Symbol	Name	Function Class
Rr632520	regulatory region 632520	501 bp proximal
Rr632521	regulatory region 632521	584 bp proximal