rs6203209 SNP Detail

Summary

• ID
  rs6203209
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  116
• Last Updated in dbSNP Build
  116
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr1:164037015 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                                         GTCAAGTAAT
  TTTCAGTCTA TGAAAGAAAC CCCAGCAACA AAGGTGTCAA CTGCTTTCCC AAAGTGCAGC
  ACAGCTAGTC AGTGTCCACA CTGACATTCA AGTTCAGATG TGCTTTGCTC AACTGTGGGC
  TGTACCTCGC CACTTAATGA ATTTACTAAG ACCTTGGGTA TTCCCAATGC TAAAGAAAGC
  TGATTATAGC TTGAGTTACG GTAAGGTGTG ACTCACTAAC AAGGATGGTT CTGTTTACTC
  R
  CTTGACTGTG TTGCAGGTGG ACATGCAGAA GGAAGTTGTA GTCACCGGGA TACAAACCCA
  AGGTGCTAAA CACTACCTAA AGTCCTGCTT TACCACGGAG TTCCAAGTGG CTTACAGCTC
  TGACCAAACC AACTGGCAGA TCTTCAGAGG GAAGAGCGGG AAGAGCGTGA TGGTTTGAGC
  ACTCATTTCT AGCTAAATCT TAAGGCTCAC GCTGGGCTTT CCATAGCAGT AGCCTTTCAA
  ATTGCATTTC                                                       
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	C57BL/6J	CZECHII/EiJ
ss8608852	WI_WGS_1_165403964	WI	MOUSE	f	SNP	G	A
SNP Consensus Information
SNP					Consensus Type	C57BL/6J	CZECHII/EiJ
rs6203209					SNP	G	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:164037015 () rs orientation: forward

Symbol	Name	Function Class
F5	coagulation factor V	Intron
Rr422161	regulatory region 422161	676 bp distal
Rr422162	regulatory region 422162	1536 bp proximal