rs6201839 SNP Detail

Summary

• ID
  rs6201839
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  116
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr6:78876188 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CAGGATTATC TTGGTTTGGA
  AAGCTTTTGG CAGAAGTACT TTTAAACAAT TAACTTAACC AAAACATAAT GAAAATGTTA
  ACAGAATATA GCAAAATACT AGCATACATT TCCTGTACTC CATTAAAAAA TACATACAGT
  GTTTTTCATT CATATTTTAT GACTAAAATT TTAGTGATGG AACTCATACG ATGAAATAGT
  R
  TTGAAAATCA CTTATTGCTC TTGCAGGAAG ACTCAGATTT TGTTCCCCGG GTACACAATG
  TACAACCTCC AAACCACCGA AAATTCTAAT AATGAAATAT CTGACACATT CTGGCCACCA
  TCAACAACTT TGCAAATGCA TACATACACA GCATACCACA CACACACACA CACACACACA
  CACACACACA CACACACTAA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	C57BL/6J	CZECHII/EiJ
ss8607480	WI_WGS_6_79796044	WI	MOUSE	f	SNP	G	A
SNP Consensus Information
SNP					Consensus Type	C57BL/6J	CZECHII/EiJ
rs6201839					SNP	G	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:78876188 () rs orientation: forward

Symbol	Name	Function Class
Rr632520	regulatory region 632520	847 bp proximal
Rr632521	regulatory region 632521	930 bp proximal